Home

Publications Christian Rinke

Youssef, N.H., Rinke, C., Stepanauskas, R., Farag, I., Woyke, T., and Elshahed, M.S. (2014). Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum /`Diapherotrites/’. ISME J.
pdf main manuscript;

Hedlund BP, Dodsworth JA, Murugapiran SK, Rinke C, Woyke T. 2014. Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter". Extremophiles. DOI 10.1007/s00792-014-0664-7.
pdf main manuscript;

Rinke C., J. Lee, N. Nath, D. Goudeau, B. Thompson, N. Poulton, E. Dmitrieff, R. Malmstrom, R. Stepanauskas, and T. Woyke, “Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics,” Nat. Protocols, vol. 9, no. 5, pp. 1038–1048, May 2014.
pdf main manuscript

Ivanova N. N., P. Schwientek, H. J. Tripp, C. Rinke, A. Pati, M. Huntemann, A. Visel, T. Woyke, N. C. Kyrpides, and E. M. Rubin, “Stop codon reassignments in the wild,” Science, vol. 344, no. 6186, pp. 909–913, May 2014.
pdf main manuscript; pdf supplements

Wilson M.C., T. Mori, C. Ruckert, A. R. Uria, M. J. Helf, K. Takada, C. Gernert, U. A. E. Steffens, N. Heycke, S. Schmitt, C. Rinke, E. J. N. Helfrich, A. O. Brachmann, C. Gurgui, T. Wakimoto, M. Kracht, M. Crusemann, U. Hentschel, I. Abe, S. Matsunaga, J. Kalinowski, H. Takeyama, and J. Piel, “An environmental bacterial taxon with a large and distinct metabolic repertoire,” Nature, vol. 506, no. 7486, pp. 58–62, Feb. 2014.
pdf main manuscript

Rinke, C. , Schwientek, P., Sczyrba, A., Ivanova, N. N., Anderson, I. J., Cheng, J.-F., Darling, A., Malfatti, S., Swan, B. K., Gies, E. A., Dodsworth, J.A., Hedlund, B. P., Tsiamis, G., Sievert S. M., 9, Liu,W.-T., 10, Eisen, J. A., Hallam, S., Kyrpides, N. C., Stepanauskas, R. 5, Rubin, E. M., Hugenholtz, P. and Woyke T. (2013). Insights into the Phylogeny and Coding Potential of Microbial Dark Matter. Nature, doi:10.1038/nature12352
pdf main manuscript; pdf supplements

Kamke, J., Alexander Sczyrba, Natalia Ivanova, Patrick Schwientek, Christian Rinke, Kostas Mavromatis, Tanja Woyke and Ute Hentschel1. 2013 Single-cell Genomics Reveals Complex Carbohydrate Degradation Patterns in Poribacterial Symbionts of Marine Sponges. The ISME Journal. doi: 10.1038/ismej.2013.111

Woyke T, Sczyrba A, Lee J, Rinke C, Tighe D, Clingenpeel S, Malmstrom R, Stepanauskas R, Cheng J-F (2011) Contamination-free single cell amplification. PLoS ONE 10:e26161.
pdf main manuscript; zip supplements

Rinke C, Lee W R (2009) A macro camera temperature logger array for deep-sea hydrothermal vent and benthic studies. Limnol. Oceanogr.: Methods 7, 2009, 527–534.
pdf main manuscript

Bayer C, Heindl N R, Rinke C, Lücker S, Joerg A. Ott J A, Bulgheresi S (2009) Molecular characterization of the symbionts associated with marine nematodes of the genus Robbea. Environmental Microbiology Reports 1(2): 136-144.
pdf main manuscript

Kloiber U, Pflugfelder B, Rinke C, Bright M (2009) Cell proliferation and growth in Zoothamnium niveum (Oligohymenophora, Peritrichida) – thiotrophic bacteria symbiosis. Symbiosis 47:1
pdf main manuscript

Rinke C, Lee W R (2009) Pathways, activities and thermal stability of anaerobic and aerobic enzymes in thermophilic vent paralvinellid worms. MEPS 382:99-112
pdf main manuscript

Rinke C, Schmitz-Esser S, Loy A, Horn M, Wagner M, Bright M (2009) High genetic similarity between two geographically distinct strains of the sulfur-oxidizing symbiont 'Candidatus Thiobios zoothamnicoli' FEMS Microbiol. Ecol. 67: 229-41.
pdf main manuscript

Rinke C, Lee R, Katz S & Bright M (2007) The effects of sulphide on growth and behaviour of the thiotrophic Zoothamnium niveum symbiosis. P. Roy. Soc. Lond. B 274: 2259–2269.
pdf main manuscript

Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M (2006) “Candidatus Thiobios zoothamnicoli,” an Ectosymbiotic Bacterium Covering the Giant Marine Ciliate Zoothamnium niveum. Appl. Environ. Microbiol. Vol. 72, No. 3, p. 2014–2021
pdf main manuscript