16S rRNA sequences
- Details
- Hits: 3975
This the summary of all 16S rRNA sequences retrieved from the 201 Single Amplified Genomes (SAGs) in the GEBA-MDM project. The sequences were amplified by rtPCR using the following primers: Forward 926wF (GAAACTYAAAKGAATTGRCGG) and reverse 1392R (ACGGGCGGTGTGTRC). In addition full length SSU amplification was performed using the primers: 27F (AGAGTTTGATCCTGGCTCAG) for Bacteria, 4aF (TCCGGTTGATCCTGCCRG) for Archaea, together with the universal reverse primer 1391R (GACGGGCGGTGWGTRCA). For some SAGs 16S sequences were also retrieved from the shotgun genome sequencing. The most complete sequence was chosen for this final dataset of 16S rRNA sequences.
You can find the 16S fasta file with all 201 sequences here : files/16S_201x_SAGs_fasta.txt
The table below provides the name of the fasta file headers, the genome name and the SAG ID:
| name | genome name | SAG ID |
| CvAYyyyy | Acetothermia bacterium SCGC_AAA255-C06 | 122 |
| CtUYyyyy | Aenigmarchaeota archaeon SCGC_AAA011-F07 | 186 |
| CUAYyyyy | Aenigmarchaeota archaeon SCGC_AAA011-O16 | 271 |
| DHEYyyyy | Aenigmarchaeota archaeon JGI_0000106-F11 | 281 |
| CJGYyyyy | Aerophobetes bacterium JGI_0000014-C22 | 222 |
| CJIYyyyy | Aerophobetes bacterium JGI_0000014-A15 | 223 |
| CibYyyyy | Aerophobetes bacterium SCGC_AAA252-L23 | 70 |
| CvFYyyyy | Aerophobetes bacterium SCGC_AAA255-F10 | 129 |
| CJ1Yyyyy | Aigarchaeota archaeon JGI_0000001-B8 | 113 |
| CJ2GYyyy | Aigarchaeota archaeon JGI_0000001-H6 | 118 |
| CnJYyyyy | Aigarchaeota archaeon JGI_0000001-A7 | 112 |
| CJJYyyyy | Aigarchaeota archaeon JGI_0000106-J15 | 288 |
| CGAYyyy2 | Aigarchaeota archaeon SCGC_AAA471-J08 | 19 |
| CGAYyyyy | Aigarchaeota archaeon SCGC_AAA471-J07 | 18 |
| CGCYyyyy | Aigarchaeota archaeon SCGC_AAA471-G05 | 14 |
| CiLYyyyy | Aigarchaeota archaeon SCGC_AAA471-D15 | 9 |
| CioYyyy2 | Aigarchaeota archaeon SCGC_AAA471-B22 | 4 |
| CpIYyyyy | Aigarchaeota archaeon SCGC_AAA471-I13 | 17 |
| CvhYyyyy | Aigarchaeota archaeon SCGC_AAA471-F17 | 13 |
| CvnYyyyy | Aigarchaeota archaeon SCGC_AAA471-A16 | 1 |
| CvpYyyy2 | Aigarchaeota archaeon SCGC_AAA471-E16 | 11 |
| CvpYyyyy | Aigarchaeota archaeon SCGC_AAA471-E14 | 10 |
| CJBYyyyy | Aminicenantes bacterium JGI_0000014-B08 | 226 |
| CGBYyyy2 | Aminicenantes bacterium SCGC_AAA252-B17 | 33 |
| COAYyyy3 | Aminicenantes bacterium SCGC_AAA252-O03 | 81 |
| COAYyyy4 | Aminicenantes bacterium SCGC_AAA252-O09 | 83 |
| COAYyyy5 | Aminicenantes bacterium SCGC_AAA252-O10 | 84 |
| COAYyyy6 | Aminicenantes bacterium SCGC_AAA252-O11 | 85 |
| COAYyyy7 | Aminicenantes bacterium SCGC_AAA252-O19 | 88 |
| COAYyyyy | Aminicenantes bacterium SCGC_AAA255-O15 | 137 |
| COGYyyy2 | Aminicenantes bacterium SCGC_AAA252-K06 | 60 |
| COGYyyy3 | Aminicenantes bacterium SCGC_AAA252-K07 | 61 |
| COGYyyy4 | Aminicenantes bacterium SCGC_AAA252-K18 | 63 |
| COGYyyyy | Aminicenantes bacterium SCGC_AAA255-K14 | 134 |
| CavYyyy4 | Aminicenantes bacterium SCGC_AAA252-L02 | 64 |
| CavYyyy5 | Aminicenantes bacterium SCGC_AAA252-L10 | 67 |
| CedYyyy2 | Aminicenantes bacterium SCGC_AAA252-P19 | 93 |
| CedYyyyy | Aminicenantes bacterium SCGC_AAA252-P13 | 91 |
| CiPYyyyy | Aminicenantes bacterium SCGC_AAA252-I14 | 54 |
| CinYyyy2 | Aminicenantes bacterium SCGC_AAA252-D18 | 40 |
| CinYyyyy | Aminicenantes bacterium SCGC_AAA252-D06 | 38 |
| CsOYyyy2 | Aminicenantes bacterium SCGC_AAA252-G04 | 47 |
| CsOYyyy3 | Aminicenantes bacterium SCGC_AAA252-G05 | 48 |
| CsOYyyy4 | Aminicenantes bacterium SCGC_AAA252-G06 | 49 |
| CsOYyyy5 | Aminicenantes bacterium SCGC_AAA252-G21 | 52 |
| CtJYyyy3 | Aminicenantes bacterium SCGC_AAA252-J09 | 57 |
| CtJYyyy4 | Aminicenantes bacterium SCGC_AAA252-J15 | 58 |
| CtJYyyy5 | Aminicenantes bacterium SCGC_AAA252-J21 | 59 |
| CvAYyyy2 | Aminicenantes bacterium SCGC_AAA252-C08 | 36 |
| CvEYyyy2 | Aminicenantes bacterium SCGC_AAA255-E05 | 125 |
| CvEYyyy3 | Aminicenantes bacterium SCGC_AAA255-E10 | 126 |
| CvOYyyy3 | Aminicenantes bacterium SCGC_AAA255-F06 | 127 |
| CvOYyyy4 | Aminicenantes bacterium SCGC_AAA255-F09 | 128 |
| CvOYyyy7 | Aminicenantes bacterium SCGC_AAA252-F08 | 46 |
| CvmYyyy4 | Aminicenantes bacterium SCGC_AAA252-A02 | 31 |
| CvmYyyy5 | Aminicenantes bacterium SCGC_AAA255-A06 | 119 |
| CvtYyyy3 | Aminicenantes bacterium SCGC_AAA252-N06 | 75 |
| CvtYyyy4 | Aminicenantes bacterium SCGC_AAA252-N07 | 76 |
| ArJYyyyy | Armatimonadetes bacterium JGI_0000077-K19 | 240 |
| COFYyyy2 | Atribacteria bacterium JGI_0000014-F07 | 227 |
| CGDYyyyy | Atribacteria bacterium SCGC_AB-164-D21 | 216 |
| CGMYyyyy | Atribacteria bacterium SCGC_AB-164-M20 | 218 |
| CGPYyyyy | Atribacteria bacterium SCGC_AB-164-P05 | 215 |
| CaGYyyyy | Atribacteria bacterium SCGC_AB-164-L03 | 213 |
| CiaYyyyy | Atribacteria bacterium SCGC_AB-164-A22 | 219 |
| CidYyyyy | Atribacteria bacterium SCGC_AB-164-G04 | 217 |
| CirYyyyy | Atribacteria bacterium SCGC_AAA252-M02 | 71 |
| CsOYyyyy | Atribacteria bacterium SCGC_AAA255-G05 | 130 |
| CvEYyyyy | Atribacteria bacterium SCGC_AAA255-E04 | 124 |
| CvtYyyy2 | Atribacteria bacterium SCGC_AAA255-N14 | 136 |
| CJLYyyyy | Atribacteria bacterium JGI_0000079-L04 | 231 |
| COFYyyy3 | Atribacteria bacterium JGI_0000079-F20 | 232 |
| COJYyyyy | Atribacteria bacterium JGI_0000059-I14 | 167 |
| B77Yyyyy | BRC1 bacterium SCGC_AAA257-C11 | 139 |
| CiuYyyyy | BRC1 bacterium SCGC_AAA252-M09 | 73 |
| CcIYyyyy | Caldiserica bacterium JGI_0000059-M03 | 171 |
| CEGYyyyy | Calescamantes bacterium JGI_0000106-G12 | 282 |
| CEIYyyy2 | Calescamantes bacterium JGI_0000106-I17 | 286 |
| CEIYyyy3 | Calescamantes bacterium JGI_0000106-I5 | 287 |
| CEPYyyyy | Calescamantes bacterium JGI_0000106-P5 | 294 |
| CEbYyyy2 | Calescamantes bacterium JGI_0000106-H18 | 283 |
| CEcYyyy2 | Calescamantes bacterium JGI_0000106-N5 | 291 |
| CEcYyyy3 | Calescamantes bacterium JGI_0000106-N7 | 292 |
| CIJYyyyy | Calescamantes bacterium JGI_0000106-J16 | 289 |
| CIMYyyyy | Calescamantes bacterium JGI_0000106-M22 | 290 |
| CErYyyyy | Calescamantes bacterium SCGC_AAA471-M6 | 25 |
| CWJYyyyy | Cloacimonetes bacterium JGI_0000014-H19 | 275 |
| CWmYyyy2 | Cloacimonetes bacterium JGI_0000014-D18 | 274 |
| CWmYyyyy | Cloacimonetes bacterium JGI_0000014-D06 | 273 |
| CsIYyyy2 | Cloacimonetes bacterium JGI_0000014-K11 | 276 |
| CKAYyyy2 | Cloacimonetes bacterium SCGC_AAA252-E13 | 43 |
| CKAYyyy3 | Cloacimonetes bacterium SCGC_AAA252-E20 | 44 |
| CKBYyyy2 | Cloacimonetes bacterium SCGC_AAA252-G07 | 50 |
| CKBYyyy3 | Cloacimonetes bacterium SCGC_AAA252-G08 | 51 |
| CKFYyyyy | Cloacimonetes bacterium SCGC_AAA252-F02 | 45 |
| CKGYyyyy | Cloacimonetes bacterium SCGC_AAA252-D03 | 37 |
| CKIYyyy2 | Cloacimonetes bacterium SCGC_AAA252-I16 | 56 |
| CKIYyyyy | Cloacimonetes bacterium SCGC_AAA252-I11 | 53 |
| CKKYyyyy | Cloacimonetes bacterium SCGC_AAA252-K16 | 62 |
| CKNYyyy2 | Cloacimonetes bacterium SCGC_AAA252-N11 | 77 |
| CKNYyyy3 | Cloacimonetes bacterium SCGC_AAA252-N14 | 78 |
| CKNYyyy4 | Cloacimonetes bacterium SCGC_AAA252-N17 | 79 |
| CKNYyyyy | Cloacimonetes bacterium SCGC_AAA252-N05 | 74 |
| CKOYyyy4 | Cloacimonetes bacterium SCGC_AAA252-O17 | 87 |
| CKOYyyyy | Cloacimonetes bacterium SCGC_AAA252-O02 | 80 |
| CKPYyyy2 | Cloacimonetes bacterium SCGC_AAA252-P10 | 90 |
| CKPYyyy3 | Cloacimonetes bacterium SCGC_AAA252-P14 | 92 |
| CKPYyyyy | Cloacimonetes bacterium SCGC_AAA252-P02 | 89 |
| CKSYyyyy | Cloacimonetes bacterium SCGC_AAA255-C20 | 123 |
| CKcYyyy2 | Cloacimonetes bacterium SCGC_AAA252-L05 | 66 |
| CKcYyyy3 | Cloacimonetes bacterium SCGC_AAA252-L13 | 68 |
| CKcYyyyy | Cloacimonetes bacterium SCGC_AAA255-L20 | 135 |
| CiKYyyyy | Cloacimonetes bacterium SCGC_AAA252-M08 | 72 |
| CvKYyyyy | Cloacimonetes bacterium SCGC_AAA255-B16 | 121 |
| CWWYyyy2 | Cloacimonetes bacterium JGI_0000059-L07 | 170 |
| CWbYyyy2 | Cloacimonetes bacterium JGI_0000059-P03 | 173 |
| CWbYyyy3 | Cloacimonetes bacterium JGI_0000059-P11 | 174 |
| CWcYyyyy | Cloacimonetes bacterium JGI_0000059-F17 | 166 |
| CWEYyyyy | Cloacimonetes bacterium JGI_0000039-M09 | 159 |
| CWbYyyyy | Cloacimonetes bacterium JGI_0000039-P09 | 162 |
| CtIYyyyy | Cloacimonetes bacterium JGI_0000039-A21 | 148 |
| CvJYyyy3 | Cloacimonetes bacterium JGI_0000039-I17 | 155 |
| CvWYyyyy | Cloacimonetes bacterium JGI_0000039-G13 | 152 |
| CUEYyyyy | Diapherotrites archaeon SCGC_AAA011-K09 | 199 |
| CULYyyyy | Diapherotrites archaeon SCGC_AAA011-E11 | 206 |
| CEhYyyyy | Diapherotrites archaeon SCGC_AAA011-N19 | 272 |
| CEJYyyyy | EM3 bacterium JGI_0000106-B10 | 280 |
| CiCYyyyy | Euryarchaeota archaeon SCGC_AAA252-I15 | 55 |
| CAJYyyyy | Fervidibacteria bacterium JGI_0000001-B9 | 114 |
| CJDYyyy0 | Fervidibacteria bacterium JGI_0000001-D5 | 115 |
| CJHYyyyy | Fervidibacteria bacterium JGI_0000054-H05 | 175 |
| CuJGYyyy | Fervidibacteria bacterium JGI_0000001-G10 | 117 |
| B01Yyyyy | Fervidibacteria bacterium SCGC_AAA471-D06 | 7 |
| CdYYyyyy | Geoarchaeota archaeon SCGC_AAA471-L13 | 22 |
| CnYYyyy2 | Geoarchaeota archaeon SCGC_AAA471-B23 | 5 |
| CnYYyyyy | Geoarchaeota archaeon SCGC_AAA471-B05 | 2 |
| CtYYyyyy | Geoarchaeota archaeon SCGC_AAA471-O08 | 29 |
| CvYYyyyy | Geoarchaeota archaeon SCGC_AAA471-C03 | 6 |
| QCQYyyy2 | Geoarchaeota archaeon SCGC_AAA471-L14 | 23 |
| CGKYyyyy | Gracilibacteria bacterium JGI_0000069-K10 | 277 |
| CGrYyyyy | Gracilibacteria bacterium JGI_0000068-E11 | 255 |
| CJPYyyyy | Gracilibacteria bacterium JGI_0000069-P22 | 278 |
| CKmYyyyy | Hydrogenedentes bacterium JGI_0000077-D07 | 236 |
| CKrYyyy2 | Hydrogenedentes bacterium JGI_0000077-O16 | 237 |
| CKtYyyyy | Hydrogenedentes bacterium JGI_0000059-N10 | 172 |
| CvIYyyyy | Hydrogenedentes bacterium JGI_0000039-J10 | 156 |
| CtWYyyyy | Latescibacteria bacterium SCGC_AAA257-K07 | 145 |
| CWAYyyyy | Latescibacteria bacterium SCGC_AAA252-E07 | 42 |
| CWGYyyyy | Latescibacteria bacterium SCGC_AAA252-B13 | 32 |
| CdWYyyy2 | Latescibacteria bacterium SCGC_AAA252-D10 | 39 |
| B76SYyyy | Marinimicrobia bacterium SCGC_AAA011-A05 | 181 |
| SbGYyyyy | Marinimicrobia bacterium SCGC_AAA257-N23 | 146 |
| SiJYyyyy | Marinimicrobia bacterium JGI_0000090-C20 | 259 |
| B78Fasta | Marinimicrobia bacterium SCGC_AAA160-I06 | 777 |
| B80Fasta | Marinimicrobia bacterium SCGC_AAA160-C11 | 779 |
| B81Fasta | Marinimicrobia bacterium SCGC_AAA160-B08 | 780 |
| B82Fasta | Marinimicrobia bacterium SCGC_AAA076-M08 | 781 |
| B79Fasta | Marinimicrobia bacterium SCGC_AAA298-D23 | 778 |
| SbBYyyyy | Marinimicrobia bacterium JGI_0000077-B04 | 234 |
| SbIYyyy2 | Marinimicrobia bacterium JGI_0000059-E23 | 165 |
| SbJYyyy2 | Marinimicrobia bacterium JGI_0000059-D20 | 164 |
| SmIYyyyy | Marinimicrobia bacterium JGI_0000059-L03 | 169 |
| SbIYyyyy | Marinimicrobia bacterium JGI_0000039-E15 | 150 |
| SbJYyyyy | Marinimicrobia bacterium JGI_0000039-D08 | 149 |
| SbOYyyyy | Marinimicrobia bacterium JGI_0000039-O11 | 161 |
| SbAYyyyy | Marinimicrobia bacterium SCGC_AAA003-E22 | 268 |
| SusYyyyy | Marinimicrobia bacterium SCGC_AAA003-L8 | 269 |
| CedYyyy3 | Microgenomates bacterium SCGC_AAA040-P11 | 265 |
| CGBYyyyy | Microgenomates bacterium SCGC_AAA011-B20 | 197 |
| CavYyyy2 | Microgenomates bacterium SCGC_AAA011-L05 | 205 |
| CiPbYyyy | Microgenomates bacterium SCGC_AAA011-I21 | 204 |
| CiriYyyy | Microgenomates bacterium SCGC_AAA011-M05 | 196 |
| CvEYyyy4 | Microgenomates bacterium SCGC_AAA011-E14 | 182 |
| CvmYyyy2 | Microgenomates bacterium SCGC_AAA011-A19 | 193 |
| CavYyyy3 | Microgenomates bacterium SCGC_AAA011-L6 | 266 |
| CvOYyyy6 | Microgenomates bacterium SCGC_AAA011-F5 | 267 |
| CtJYyyyy | Microgenomates bacterium SCGC_AAA255-J07 | 132 |
| ALGYyyyy | Nanoarchaeota archaeon SCGC_AAA011-L15 | 208 |
| CUEYyyy2 | Nanoarchaeota archaeon SCGC_AAA011-K22 | 202 |
| CUnYyyyy | Nanoarchaeota archaeon SCGC_AAA011-J02 | 207 |
| CsUYyyyy | Nanoarchaeota archaeon SCGC_AAA011-G17 | 198 |
| CvUYyyy2 | Nanoarchaeota archaeon SCGC_AAA011-L22 | 192 |
| CUGYyyyy | Nanoarchaeota archaeon SCGC_AAA011-D5 | 270 |
| CavYyyyy | Omnitrophica bacterium SCGC_AAA011-L16 | 184 |
| CvmYyyy3 | Omnitrophica bacterium SCGC_AAA011-A17 | 263 |
| COAYyyy2 | Omnitrophica bacterium SCGC_AAA257-O07 | 147 |
| CGBYyyy3 | Omnitrophica bacterium SCGC_AAA252-B19 | 34 |
| B71Yyyy2 | Parcubacteria bacterium SCGC_AAA036-E14 | 178 |
| B73Yyyyy | Parcubacteria bacterium SCGC_AAA040-L21 | 179 |
| B71Yyyyy | Parcubacteria bacterium SCGC_AAA010-E09 | 100 |
| CGJYyyy2 | Parcubacteria bacterium SCGC_AAA011-J21 | 191 |
| CabYyyy2 | Parcubacteria bacterium SCGC_AAA011-A09 | 189 |
| CabYyyyy | Parcubacteria bacterium SCGC_AAA011-A08 | 185 |
| CivYyyyy | Parcubacteria bacterium SCGC_AAA011-N16 | 262 |
| B72Yyyyy | Parcubacteria bacterium SCGC_AAA255-P19 | 138 |
| B74Yyyyy | Parcubacteria bacterium SCGC_AB-164-E21 | 209 |
| SbDYyyyy | Synergistetes bacterium JGI_0000079-D21 | 233 |
| TmEYyyyy | Thaumarchaeota archaeon SCGC_AB-179-E04 | 221 |
| TSGYyyyy | Thaumarchaeota archaeon SCGC_AAA007-O23 | 783 |
| TrJYyyyy | Thermotogae bacterium JGI_0000106-O11 | 293 |
| CWtYyyyy | WS1 bacterium JGI_0000059-K21 | 168 |
